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QTL data available at Bin (Access the full map)

locus name in red = cloned by MIP    locus name in blue = cloned

AccessionLocusLocus nameBinQTL traitPopulationFlanking Marker(s)
1.01 QTL - Principal component 2 - tasselIBM mmp102
ct2 compact plant2 1.02 QTL - cob diameter5
ct2 compact plant2 1.02 QTL - cob diameter32
ct2 compact plant2 1.02 QTL - cob diameter27
ct2 compact plant2 1.02 QTL - cob diameter11
ct2 compact plant2 1.02 QTL - Principal component 3 - tasselIBM umc1976
ct2 compact plant2 1.02 QTL - Principal component 2 - tasselIBM lim504
ifa1 indeterminate floral apex1 1.02 QTL - cob diameter5
ifa1 indeterminate floral apex1 1.02 QTL - cob diameter32
ifa1 indeterminate floral apex1 1.02 QTL - cob diameter27
ifa1 indeterminate floral apex1 1.02 QTL - cob diameter11
ifa1 indeterminate floral apex1 1.02 QTL - Principal component 3 - tasselIBM umc1976
ifa1 indeterminate floral apex1 1.02 QTL - Principal component 2 - tasselIBM lim504
CAB85962 zmm14 Zea mays MADS14 1.02 QTL - Principal component 3 - tasselIBM umc1976
CAB85962 zmm14 Zea mays MADS14 1.02 QTL - Principal component 2 - tasselIBM lim504
CAB85962 zmm14 Zea mays MADS14 1.02 QTL - cob diameter5
CAB85962 zmm14 Zea mays MADS14 1.02 QTL - cob diameter32
CAB85962 zmm14 Zea mays MADS14 1.02 QTL - cob diameter27
CAB85962 zmm14 Zea mays MADS14 1.02 QTL - cob diameter11
1.03-1.06 QTL - Principal component 1 - tasselILP x B73 phi001-umc1035
clv28 CQRAV28R clavata1-like gene - Pioneer 1.03 QTL - cob diameter23
clv28 CQRAV28R clavata1-like gene - Pioneer 1.03 QTL - Tassel weight (TW)IBM mmp100
clv28 CQRAV28R clavata1-like gene - Pioneer 1.03 QTL - Tassel weight (TW)ILP x B73 phi001
clv28 CQRAV28R clavata1-like gene - Pioneer 1.03 QTL - Principal component 2 - tasselIBM mmp23
ts2 tassel seed2 1.03 QTL - Tassel weight (TW)ILP x B73 phi001
ts2 tassel seed2 1.03 QTL - Principal component 2 - tasselIBM mmp23
ts2 tassel seed2 1.03 QTL - cob diameter23
ts2 tassel seed2 1.03 QTL - Tassel weight (TW)IBM mmp100
1.04 QTL - Principal component 2 - tasselIBM csu207
1.05 QTL - Principal component 2 - tasselIBM mmp39
1.05 QTL - Kernel number density (KD)IHO x B73 umc2025
1.05/1.06 QTL - Primary branch spikelet density (PSD)IHO x B73 umc167
1.05 QTL - Primary branch spikelet density (PSD)IBM mmp124
1.05 QTL - Principal component 1 - tasselIBM mmp124
1.06/1.07 QTL - Principal component 2 - tasselILP x B73 p200674-u33
bif2 barren inflorescence2 1.06 QTL - Principal component 2 - tasselIBM asg58
bif2 barren inflorescence2 1.06 QTL - Central spike spikelet density (CSD)IBM umc1812
bif2 barren inflorescence2 1.06 QTL - Principal component 3 - tasselIBM asg58
bif2 barren inflorescence2 1.06 QTL - Primary branch spikelet density (PSD)IBM bnlg1615
bif2 barren inflorescence2 1.06 QTL - Principal component 3 - tasselIBM bnlg1057
bif2 barren inflorescence2 1.06 QTL - Principal component 1 - tasselIBM bnl5.59a
bif2 barren inflorescence2 1.06 QTL - Central spike spikelet density (CSD)IHO x B73 n279
bif2 barren inflorescence2 1.06 QTL - cob diameter33
1.07 QTL - cob diameter28
1.07 QTL - cob diameter6
1.07 QTL - cob diameter12
1.07 QTL - Principal component 1 - tasselIBM csu374b
1.07 QTL - cob diameter24
1.09/1.10 QTL - Principal component 2 - tasselILP x B73 glb1-u106
kip bell-like homeobox interacts with KN1 1.09 QTL - Central spike spikelet density (CSD)ILP x B73 bmc1597
kip bell-like homeobox interacts with KN1 1.09 QTL - Central spike spikelet density (CSD)IBM chrom7
kip bell-like homeobox interacts with KN1 1.09 QTL - Principal component 1 - tasselIBM msu2(iaglu)
tb1 teosinte branched1 1.09 QTL - Central spike spikelet density (CSD)ILP x B73 bmc1597
tb1 teosinte branched1 1.09 QTL - Central spike spikelet density (CSD)IBM chrom7
tb1 teosinte branched1 1.09 QTL - Principal component 1 - tasselIBM msu2(iaglu)
tls1 tasselless1 1.09 QTL - Central spike spikelet density (CSD)IBM chrom7
tls1 tasselless1 1.09 QTL - Principal component 1 - tasselIBM msu2(iaglu)
tls1 tasselless1 1.09 QTL - Central spike spikelet density (CSD)ILP x B73 bmc1597
ts3 tassel seed3 1.09 QTL - Central spike spikelet density (CSD)ILP x B73 bmc1597
ts3 tassel seed3 1.09 QTL - Central spike spikelet density (CSD)IBM chrom7
ts3 tassel seed3 1.09 QTL - Principal component 1 - tasselIBM msu2(iaglu)
X61308 kn1 knotted1 1.10 QTL - Principal component 3 - tasselIBM vef101b
X61308 kn1 knotted1 1.10 QTL - Tassel weight (TW)IBM AY110019
X61308 kn1 knotted1 1.10 QTL - Principal component 2 - tasselIHO x B73 umc106-bmc1671
X61308 kn1 knotted1 1.10 QTL - Branch Zone length (L3)IHO x B73 umc106
X61308 kn1 knotted1 1.10 QTL - Tassel weight (TW)IHO x B73 umc106
X61308 kn1 knotted1 1.10 QTL - Total tassel length (L1)IHO x B73 umc106
AY107753 knox3 knotted related homeobox8 1.10 QTL - Principal component 2 - tasselIHO x B73 umc106-bmc1671
AY107753 knox3 knotted related homeobox8 1.10 QTL - Branch Zone length (L3)IHO x B73 umc106
AY107753 knox3 knotted related homeobox8 1.10 QTL - Tassel weight (TW)IHO x B73 umc106
AY107753 knox3 knotted related homeobox8 1.10 QTL - Total tassel length (L1)IHO x B73 umc106
AY107753 knox3 knotted related homeobox8 1.10 QTL - Principal component 3 - tasselIBM vef101b
AY107753 knox3 knotted related homeobox8 1.10 QTL - Tassel weight (TW)IBM AY110019
DQ056236 knox8 knotted related homeobox8 1.10 QTL - Principal component 3 - tasselIBM vef101b
DQ056236 knox8 knotted related homeobox8 1.10 QTL - Tassel weight (TW)IBM AY110019
DQ056236 knox8 knotted related homeobox8 1.10 QTL - Principal component 2 - tasselIHO x B73 umc106-bmc1671
DQ056236 knox8 knotted related homeobox8 1.10 QTL - Branch Zone length (L3)IHO x B73 umc106
DQ056236 knox8 knotted related homeobox8 1.10 QTL - Tassel weight (TW)IHO x B73 umc106
DQ056236 knox8 knotted related homeobox8 1.10 QTL - Total tassel length (L1)IHO x B73 umc106
1.12 QTL - Principal component 2 - tasselIBM p-umc2244
1.12 QTL - cob diameter13
2.00 QTL - Principal component 3 - tasselIBM p-ZmISU53
2.01 QTL - Principal component 1 - tasselIBM p-ZmISU144
2.02 QTL - cob diameter14
2.02 QTL - Number of Kernels/Row (KN)IHO x B73 bmc1017
2.02 QTL - Number of Kernels/Row (KN)IBM p-csu186
2.02 QTL - Principal component 3 - tasselIBM p-G21B-02A
lfyB leafyB (Doebley) 2.03 QTL - kernel row number (Doebley)
lfyB leafyB (Doebley) 2.03 QTL - Principal component 1 - tasselIBM p-Bnlg1064
lfyB leafyB (Doebley) 2.03 QTL - Principal component 3 - tasselIBM p-mmc0231
abph1 abphyl1 2.04 QTL - Principal component 3 - tasselIBM p-G24A-04
abph1 abphyl1 2.04 QTL - Kernel number density (KD)ILP x B73 p100012
abph1 abphyl1 2.04 QTL - Total spikelets on central spike (TS)IHO x B73 phi083
abph1 abphyl1 2.04 QTL - Principal component 2 - tasselIBM p-umc1454
abph1 abphyl1 2.04 QTL - Central spike spikelet density (CSD)IHO x B73 phi083
abph1 abphyl1 2.04 QTL - Principal component 3 - tasselIHO x B73 phi083-umc14
ba2 barren stalk2 2.04 QTL - Central spike spikelet density (CSD)IHO x B73 phi083
ba2 barren stalk2 2.04 QTL - Principal component 3 - tasselIHO x B73 phi083-umc14
ba2 barren stalk2 2.04 QTL - Principal component 3 - tasselIBM p-G24A-04
ba2 barren stalk2 2.04 QTL - Kernel number density (KD)ILP x B73 p100012
ba2 barren stalk2 2.04 QTL - Total spikelets on central spike (TS)IHO x B73 phi083
ba2 barren stalk2 2.04 QTL - Principal component 2 - tasselIBM p-umc1454
DQ317429 cen1B centroradialis-like gene - McSteen 2.04 QTL - Total spikelets on central spike (TS)IHO x B73 phi083
DQ317429 cen1B centroradialis-like gene - McSteen 2.04 QTL - Principal component 2 - tasselIBM p-umc1454
DQ317429 cen1B centroradialis-like gene - McSteen 2.04 QTL - Central spike spikelet density (CSD)IHO x B73 phi083
DQ317429 cen1B centroradialis-like gene - McSteen 2.04 QTL - Principal component 3 - tasselIHO x B73 phi083-umc14
DQ317429 cen1B centroradialis-like gene - McSteen 2.04 QTL - Principal component 3 - tasselIBM p-G24A-04
DQ317429 cen1B centroradialis-like gene - McSteen 2.04 QTL - Kernel number density (KD)ILP x B73 p100012
epf261 ra1-like gene epf261 2.04 QTL - Principal component 3 - tasselIBM p-G24A-04
epf261 ra1-like gene epf261 2.04 QTL - Kernel number density (KD)ILP x B73 p100012
epf261 ra1-like gene epf261 2.04 QTL - Total spikelets on central spike (TS)IHO x B73 phi083
epf261 ra1-like gene epf261 2.04 QTL - Principal component 2 - tasselIBM p-umc1454
epf261 ra1-like gene epf261 2.04 QTL - Central spike spikelet density (CSD)IHO x B73 phi083
epf261 ra1-like gene epf261 2.04 QTL - Principal component 3 - tasselIHO x B73 phi083-umc14
ts1 tassel seed1 2.04 QTL - Central spike spikelet density (CSD)IHO x B73 phi083
ts1 tassel seed1 2.04 QTL - Principal component 3 - tasselIHO x B73 phi083-umc14
ts1 tassel seed1 2.04 QTL - Principal component 3 - tasselIBM p-G24A-04
ts1 tassel seed1 2.04 QTL - Kernel number density (KD)ILP x B73 p100012
ts1 tassel seed1 2.04 QTL - Total spikelets on central spike (TS)IHO x B73 phi083
ts1 tassel seed1 2.04 QTL - Principal component 2 - tasselIBM p-umc1454
2.06 QTL - Number of Kernel rows/cob (ROW)IHO x B73 bmc1396
2.06 QTL - cob diameter15
2.07 QTL - cob diameter29
2.07 QTL - Principal component 3 - tasselIBM p-phi251315
2.07 QTL - cob diameter34
2.07 QTL - cob diameter7
2.07 QTL - cob diameter25
2.08 QTL - Principal component 2 - tasselIBM AY109645_IDP
2.08 QTL - Central spike spikelet density (CSD)IBM umc1049
2.08 QTL - Central spike spikelet density (CSD)ILP x B73 bmc1662
2.08 QTL - Principal component 2 - tasselIBM p-ZmISU115
2.08 QTL - Principal component 1 - tasselIBM p-mmpP6F07
2.08 QTL - Principal component 3 - tasselILP x B73 phi127-bnlg469
2.08 QTL - Principal component 3 - tasselIBM p-umc1049
2.08 QTL - Principal component 2 - tasselIBM p-umc1049
2.08 QTL - Principal component 2 - tasselIHO x B73 n298-phi127
2.08 QTL - cob diameter16
pinA CBSA021 pinformed-like gene - Pioneer 2.09 QTL - Principal component 2 - tasselIBM p-umc49
pinA CBSA021 pinformed-like gene - Pioneer 2.09 QTL - Principal component 3 - tasselIBM p-umc1256
pinA CBSA021 pinformed-like gene - Pioneer 2.09 QTL - Principal component 3 - tasselIBM AY110389_SNP
pinA CBSA021 pinformed-like gene - Pioneer 2.09 QTL - Principal component 1 - tasselIBM p-umc49
3.01 QTL - Principal component 3 - tasselIBM p-umc2257
ra2 ramosa2 3.02 QTL - Principal component 1 - tasselIBM p-csu32
ra2 ramosa2 3.02 QTL - Number of Kernels/Row (KN)ILP x B73 p200042
zag5 Zea AGAMOUS homologue5 3.02 QTL - Principal component 1 - tasselIBM p-csu32
zag5 Zea AGAMOUS homologue5 3.02 QTL - Number of Kernels/Row (KN)ILP x B73 p200042
fea3 fasciated ear3 3.04 QTL - Principal component 3 - tasselIBM p-umc1449
fea3 fasciated ear3 3.04 QTL - cob diameter1
fea3 fasciated ear3 3.04 QTL - Number of Kernel rows/cob (ROW)IHO x B73 umc1012
fea3 fasciated ear3 3.04 QTL - Kernel number density (KD)IHO x B73 bmc1452
fea3 fasciated ear3 3.04 QTL - Principal component 3 - tasselIBM p-std660015B02
AF100455 lg3 liguleless3 3.04 QTL - Kernel number density (KD)IHO x B73 bmc1452
AF100455 lg3 liguleless3 3.04 QTL - Principal component 3 - tasselIBM p-std660015B02
AF100455 lg3 liguleless3 3.04 QTL - Principal component 3 - tasselIBM p-umc1449
AF100455 lg3 liguleless3 3.04 QTL - cob diameter1
AF100455 lg3 liguleless3 3.04 QTL - Number of Kernel rows/cob (ROW)IHO x B73 umc1012
tru1 tassels replace upper ears1 3.04 QTL - Principal component 3 - tasselIBM p-umc1449
tru1 tassels replace upper ears1 3.04 QTL - cob diameter1
tru1 tassels replace upper ears1 3.04 QTL - Number of Kernel rows/cob (ROW)IHO x B73 umc1012
tru1 tassels replace upper ears1 3.04 QTL - Kernel number density (KD)IHO x B73 bmc1452
tru1 tassels replace upper ears1 3.04 QTL - Principal component 3 - tasselIBM p-std660015B02
ts4 tassel seed4 3.04 QTL - Number of Kernel rows/cob (ROW)IHO x B73 umc1012
ts4 tassel seed4 3.04 QTL - Kernel number density (KD)IHO x B73 bmc1452
ts4 tassel seed4 3.04 QTL - Principal component 3 - tasselIBM p-std660015B02
ts4 tassel seed4 3.04 QTL - Principal component 3 - tasselIBM p-umc1449
ts4 tassel seed4 3.04 QTL - cob diameter1
3.05/3.06 QTL - Central spike length (L2)IHO x B73 n204
te1 terminal ear1 3.05 QTL - Principal component 3 - tasselILP x B73 n204-u60a
te1 terminal ear1 3.05 QTL - Principal component 3 - tasselIBM AY111541_IDP
te1 terminal ear1 3.05 QTL - Principal component 3 - tasselILP x B73 u102-n247
te1 terminal ear1 3.05 QTL - Central spike length (L2)IBM umc1174
zag2 Zea AGAMOUS homologue2- expn in ear 3.05 QTL - Central spike length (L2)IBM umc1174
zag2 Zea AGAMOUS homologue2- expn in ear 3.05 QTL - Principal component 3 - tasselILP x B73 n204-u60a
zag2 Zea AGAMOUS homologue2- expn in ear 3.05 QTL - Principal component 3 - tasselIBM AY111541_IDP
zag2 Zea AGAMOUS homologue2- expn in ear 3.05 QTL - Principal component 3 - tasselILP x B73 u102-n247
3.06/3.07 QTL - Principal component 2 - tasselIHO x B73 bmc1047-bmc1605
AY683002 ba1 barren stalk1 3.06 QTL - Number of Kernels/Row (KN)ILP x B73 u60a
AY683002 ba1 barren stalk1 3.06 QTL - Principal component 1 - tasselIBM p-LIM424
erf4a ERF gene in tassels/ears 3.06 QTL - Number of Kernels/Row (KN)ILP x B73 u60a
erf4a ERF gene in tassels/ears 3.06 QTL - Principal component 1 - tasselIBM p-LIM424
lg2 liguleless2 3.06 QTL - Number of Kernels/Row (KN)ILP x B73 u60a
lg2 liguleless2 3.06 QTL - Principal component 1 - tasselIBM p-LIM424
ub1 unbranched1 (may be identical to lg2) 3.06 QTL - Number of Kernels/Row (KN)ILP x B73 u60a
ub1 unbranched1 (may be identical to lg2) 3.06 QTL - Principal component 1 - tasselIBM p-LIM424
3.07 QTL - Number of Kernel rows/cob (ROW)IBM p-umc3
3.07 QTL - Tassel weight (TW)ILP x B73 bmc1605
3.07 QTL - Principal component 1 - tasselIBM p-std946073C08
3.07 QTL - Number of Kernel rows/cob (ROW)ILP x B73 bmc1605
3.07 QTL - Tassel weight (TW)IHO x B73 bmc1605
3.08 QTL - Principal component 1 - tasselIBM p-umc1320
3.08 QTL - Tassel branch number density (BN/L3)IHO x B73 n432
pinB CBSA021 pinformed-like gene - Pioneer 3.09 QTL - Principal component 1 - tasselILP x B73 sh21-u63
pinB CBSA021 pinformed-like gene - Pioneer 3.09 QTL - Principal component 3 - tasselIBM p-csu303
epf521 ra1-like gene epf521 4.01 QTL - Principal component 2 - tasselIBM p-umc1682
pd1 paired rows1 4.02 QTL - Principal component 2 - tasselIBM p-php20725
sos1 supressor of sessile spikelets1 4.02 QTL - Principal component 2 - tasselIBM p-php20725
ts5 tassel seed5 4.03 QTL - Principal component 1 - tasselIBM AY110573_SNP
ts5 tassel seed5 4.03 QTL - Principal component 2 - tasselIBM p-ZmISU144
ts5 tassel seed5 4.03 QTL - Tassel weight (TW)IHO x B73 bmc1126
4.05/4.06 QTL - Total tassel length (L1)IHO x B73 umc1662
4.05/4.06 QTL - Primary branch spikelet density (PSD)IHO x B73 umc1662
4.05/4.06 QTL - Principal component 2 - tasselILP x B73 bmc1755umc2027
AY055124 fea2 fasciated ear2 4.05 QTL - cob diameter8
AY055124 fea2 fasciated ear2 4.05 QTL - Central spike length (L2)IBM umc2061
AY055124 fea2 fasciated ear2 4.05 QTL - Tassel branch number (TBN)ILP x B73 bmc1755
AY055124 fea2 fasciated ear2 4.05 QTL - Number of Kernel rows/cob (ROW)IBM
AY055124 fea2 fasciated ear2 4.05 QTL - Number of Kernels/Row (KN)IBM p-umc191
AY055124 fea2 fasciated ear2 4.05 QTL - Branch number/Central spike lengthILP x B73 bmc1755
AY055124 fea2 fasciated ear2 4.05 QTL - Principal component 1 - tasselIBM p-umc1142
AY055124 fea2 fasciated ear2 4.05 QTL - Number of Kernels/Row (KN)IHO x B73 bmc1217
AY055124 fea2 fasciated ear2 4.05 QTL - Central spike length (L2)ILP x B73 bmc1755
4.06 QTL - Primary branch spikelet density (PSD)IBM mmpP3E07
4.06 QTL - Principal component 1 - tasselIBM p-umc2027
4.06 QTL - cob diameter17
4.06 QTL - Total tassel length (L1)IBM umc2027
Tu1 tunicate1 4.07 QTL - Principal component 2 - tasselIBM p-umc104
Tu1 tunicate1 4.07 QTL - cob diameter2
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Total spikelets on central spike (TS)IBM umc2285
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Total spikelets/branch numberIHO x B73 bmc2244
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Principal component 2 - tasselILP x B73 umc2038-b7.65
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Principal component 1 - tasselIBM p-mmpP5E10
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Total spikelets/branch numberIBM umc2188
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - BZ length/spike length (L3/L2)IHO x B73 n410
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Central spike spikelet density (CSD)IHO x B73 n410
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Central spike length (L2)ILP x B73 umc1086
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Principal component 3 - tasselIBM p-ufg113-015
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - BZ length/spike length (L3/L2)IBM mmpP5E10
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Central spike length (L2)IBM umc2188
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Total spikelets on central spike (TS)IHO x B73 n410
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Total spikelets/branch numberILP x B73 bmc2162
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Principal component 3 - tasselIBM p-mmpP5E10
mpA CFRME53 monopterous-like gene - Pioneer 4.08 QTL - Principal component 1 - tasselIBM p-umc1808
4.09 QTL - Principal component 3 - tasselIBM AY110231_IDP
4.09 QTL - Number of Kernels/Row (KN)ILP x B73 umc1101
4.09 QTL - Branch Zone length (L3)IHO x B73 bnlg292
4.09 QTL - Principal component 1 - tasselIBM p-umc2287
4.11 QTL - Principal component 3 - tasselIBM p-umc1649
fea1 fasciated ear 1 5.00 QTL - cob diameter18
fea1 fasciated ear 1 5.00 QTL - Principal component 1 - tasselIBM p-ufg99F-220-C12
clv40 CCRBA40R clavata1-like gene - Pioneer 5.01 QTL - Principal component 1 - tasselIBM p-umc1679
clv40 CCRBA40R clavata1-like gene - Pioneer 5.01 QTL - Principal component 2 - tasselIBM p-psb239
5.02 QTL - Principal component 2 - tasselIBM p-ufg96-603-A05
5.02/5.03 QTL - Total tassel length (L1)IHO x B73 phi113
mpB CFRME53 monopterous-like gene - Pioneer 5.03 QTL - Principal component 2 - tasselIBM AY111142_IDP
mpB CFRME53 monopterous-like gene - Pioneer 5.03 QTL - Total tassel length (L1)IBM umc2296
mpB CFRME53 monopterous-like gene - Pioneer 5.03 QTL - cob diameter19
td1 thick tassel dwarf1 5.03 QTL - cob diameter19
td1 thick tassel dwarf1 5.03 QTL - Principal component 2 - tasselIBM AY111142_IDP
td1 thick tassel dwarf1 5.03 QTL - Total tassel length (L1)IBM umc2296
5.04 QTL - Tassel branch number density (BN/L3)IBM umc2298
5.04 QTL - Tassel branch angle (TBA)IHO x B73 co7bo2cd
5.04 QTL - Primary branch spikelet density (PSD)ILP x B73 n295
5.04 QTL - Principal component 1 - tasselIBM p-mmpP5C11
5.04 QTL - Primary branch spikelet density (PSD)IHO x B73 co7bo2cd
5.04 QTL - Principal component 1 - tasselILP x B73 td1-bmc2323
5.04 QTL - cob diameter9
5.04 QTL - Tassel branch number density (BN/L3)IHO x B73 co7bo2cd
5.04 QTL - Principal component 3 - tasselILP x B73 td1-bmc2323
5.04 QTL - Tassel branch angle (TBA)ILP x B73 bmc2323
5.05 QTL - Principal component 3 - tasselIBM p-mmpP6G04
5.05 QTL - cob diameter3
5.05 QTL - Number of Kernel rows/cob (ROW)IHO x B73 umc1822
5.06/5.07 QTL - Tassel weight (TW)IHO x B73 p200531
5.06/5.07 QTL - Branch number/Central spike lengthIHO x B73 p200531
5.06/5.07 QTL - Principal component 1 - tasselIHO x B73 p200531-phi048
5.06/5.07 QTL - Tassel branch number (TBN)IHO x B73 p200531
pt* polytypic-McClintock (bearded ear) 5.06 QTL - Principal component 2 - tasselIBM p-rz567
pt* polytypic-McClintock (bearded ear) 5.06 QTL - Central spike spikelet density (CSD)ILP x B73 p200566
pt* polytypic-McClintock (bearded ear) 5.06 QTL - Total spikelets on central spike (TS)IBM umc2305
pt* polytypic-McClintock (bearded ear) 5.06 QTL - Central spike length (L2)ILP x B73 p200566
pt* polytypic-McClintock (bearded ear) 5.06 QTL - Total spikelets on central spike (TS)ILP x B73 p200566
zag3 Zea AGAMOUS homologue3 5.06 QTL - Total spikelets on central spike (TS)ILP x B73 p200566
zag3 Zea AGAMOUS homologue3 5.06 QTL - Principal component 2 - tasselIBM p-rz567
zag3 Zea AGAMOUS homologue3 5.06 QTL - Central spike spikelet density (CSD)ILP x B73 p200566
zag3 Zea AGAMOUS homologue3 5.06 QTL - Total spikelets on central spike (TS)IBM umc2305
zag3 Zea AGAMOUS homologue3 5.06 QTL - Central spike length (L2)ILP x B73 p200566
5.08 QTL - Principal component 3 - tasselIBM p-umc1792
6.00 QTL - Principal component 1 - tasselIBM p-Bnlg161
si1 silky1 6.02 QTL - Principal component 1 - tasselIBM p-psr129
tsh3 tassel sheath3 6.05 QTL - Principal component 2 - tasselIBM p-umc1388
tsh3 tassel sheath3 6.05 QTL - Principal component 3 - tasselIBM p-std606017H04
tsh3 tassel sheath3 6.05 QTL - Total spikelets/branch numberIBM std606017H04
tsh3 tassel sheath3 6.05 QTL - Principal component 2 - tasselIBM p-mmpP3G01
tsh3 tassel sheath3 6.05 QTL - Total spikelets/branch numberIHO x B73 phi129
zag1 Zea AGAMOUS homologue1- strong ear expn 6.05 QTL - Principal component 2 - tasselIBM p-mmpP3G01
zag1 Zea AGAMOUS homologue1- strong ear expn 6.05 QTL - Total spikelets/branch numberIHO x B73 phi129
zag1 Zea AGAMOUS homologue1- strong ear expn 6.05 QTL - Principal component 2 - tasselIBM p-umc1388
zag1 Zea AGAMOUS homologue1- strong ear expn 6.05 QTL - Principal component 3 - tasselIBM p-std606017H04
zag1 Zea AGAMOUS homologue1- strong ear expn 6.05 QTL - Total spikelets/branch numberIBM std606017H04
6.06/6.07 QTL - Total tassel length (L1)IHO x B73 dup015
6.06/6.07 QTL - Principal component 2 - tasselIHO x B73 dup015-umc62
pt1 polytypic ear1 6.06 QTL - Tassel weight (TW)ILP x B73 umc1762
6.07 QTL - Central spike spikelet density (CSD)IBM umc1350
6.07 QTL - Central spike spikelet density (CSD)ILP x B73 u62
6.07 QTL - Total spikelets on central spike (TS)IBM umc1350
6.07 QTL - Total spikelets on central spike (TS)ILP x B73 u62
6.07 QTL - Principal component 3 - tasselIBM p-umc2323
6.07 QTL - Principal component 1 - tasselILP x B73 umc1762-u62
6.07 QTL - Central spike length (L2)ILP x B73 u62
6.08 QTL - Principal component 1 - tasselIBM p-umc2324
6.08 QTL - Principal component 3 - tasselIBM p-umc2324
7.00/7.02 QTL - Principal component 2 - tasselILP x B73 umc1695-ra1
7.00/7.02 QTL - Tassel branch number (TBN)ILP x B73 umc1695
ap2-like2 putative target of ts4 7.00 QTL - Principal component 3 - tasselIBM p-umc1426
ap2-like2 putative target of ts4 7.00 QTL - Principal component 2 - tasselIBM p-umc1545
L44133 rs1 rough sheath1 7.00 QTL - Principal component 3 - tasselIBM p-umc1426
L44133 rs1 rough sheath1 7.00 QTL - Principal component 2 - tasselIBM p-umc1545
ZmKin1 CLAVATA1-like sequence 7.00 QTL - Principal component 3 - tasselIBM p-umc1426
ZmKin1 CLAVATA1-like sequence 7.00 QTL - Principal component 2 - tasselIBM p-umc1545
clv64 CRWAX64R clavata1-like gene - Pioneer 7.01 QTL - Principal component 2 - tasselIBM p-umc2325
clv64 CRWAX64R clavata1-like gene - Pioneer 7.01 QTL - Principal component 3 - tasselIBM p-std687018G05
ra1 ramosa1 7.02 QTL - Branch Zone length (L3)IHO x B73 phi034
ra1 ramosa1 7.02 QTL - Total tassel length (L1)IHO x B73 gl1
ra1 ramosa1 7.02 QTL - Principal component 2 - tasselIBM p-csu1140
ra1 ramosa1 7.02 QTL - Total spikelets/branch numberIBM umc1978
ra1 ramosa1 7.02 QTL - Tassel branch number (TBN)IBM umc5
ra1 ramosa1 7.02 QTL - Number of Kernels/Row (KN)IHO x B73 bnlg1094
ra1 ramosa1 7.02 QTL - Total spikelets/branch numberIHO x B73 phi034
ra1 ramosa1 7.02 QTL - Tassel branch number (TBN)IHO x B73 phi034
ra1 ramosa1 7.02 QTL - Principal component 3 - tasselIBM p-mmpP2C11
ra1 ramosa1 7.02 QTL - BZ length/spike length (L3/L2)IBM Asg34
ra1 ramosa1 7.02 QTL - Tassel weight (TW)IBM csu1140
ra1 ramosa1 7.02 QTL - Principal component 3 - tasselIHO x B73 phi034-ra1
ra1 ramosa1 7.02 QTL - Branch number/Central spike lengthIHO x B73 phi034
ra1 ramosa1 7.02 QTL - Tassel weight (TW)IHO x B73 phi034
ra1 ramosa1 7.02 QTL - Number of Kernels/Row (KN)IBM p-umc2142
ra1 ramosa1 7.02 QTL - Branch Zone length (L3)IBM bnlg1792
ra1 ramosa1 7.02 QTL - Total tassel length (L1)IBM lim333
ra1 ramosa1 7.02 QTL - BZ length/spike length (L3/L2)IHO x B73 phi034
tp1 teopod1 7.03 QTL - cob diameter20
tp1 teopod1 7.03 QTL - Tassel weight (TW)ILP x B73 n455
tp1 teopod1 7.03 QTL - cob diameter26
tp1 teopod1 7.03 QTL - Principal component 1 - tasselIBM p-umc1301
tp1 teopod1 7.03 QTL - cob diameter30
tp1 teopod1 7.03 QTL - cob diameter10
tp1 teopod1 7.03 QTL - Principal component 2 - tasselIBM p-Bnlg1070
tp1 teopod1 7.03 QTL - cob diameter35
ra3 ramosa3 7.04 QTL - Principal component 1 - tasselIBM p-Bcd349
ra3 ramosa3 7.04 QTL - Principal component 2 - tasselIBM p-G20E-05A
sra sister of ramosa3 7.04 QTL - Principal component 2 - tasselIBM p-G20E-05A
sra sister of ramosa3 7.04 QTL - Principal component 1 - tasselIBM p-Bcd349
bd1 branched silkless1 7.06 QTL - Principal component 1 - tasselIBM p-G24A-05
8.01 QTL - Principal component 2 - tasselIBM p-umc1327
8.02/8.03 QTL - Total spikelets on central spike (TS)ILP x B73 bmc2235
8.02/8.03 QTL - Branch Zone length (L3)IHO x B73 n260
zmm2 Zea mays MADS2 8.02 QTL - Principal component 3 - tasselILP x B73 bmc2235-bmc1863
zmm2 Zea mays MADS2 8.02 QTL - Central spike spikelet density (CSD)ILP x B73 bmc2235
zmm2 Zea mays MADS2 8.02 QTL - BZ length/spike length (L3/L2)IHO x B73 bmc2235
zmm2 Zea mays MADS2 8.02 QTL - Total spikelets/branch numberILP x B73 bmc2235
zmm2 Zea mays MADS2 8.02 QTL - Number of Kernels/Row (KN)ILP x B73 p100040
8.03/8.05 QTL - Tassel branch number density (BN/L3)IHO x B73 bmc1834
ap2-like ids1-like gene 8.03 QTL - Principal component 1 - tasselIBM p-umc1984
ap2-like ids1-like gene 8.03 QTL - Total spikelets on central spike (TS)IHO x B73 bmc1834
ap2-like ids1-like gene 8.03 QTL - Principal component 2 - tasselIBM p-umc2075
ap2-like ids1-like gene 8.03 QTL - Branch Zone length (L3)IBM cdo1160
ap2-like ids1-like gene 8.03 QTL - Principal component 2 - tasselIBM p-umc1457
ap2-like ids1-like gene 8.03 QTL - Tassel branch number density (BN/L3)IBM umc1735
epf212 ra1-like gene epf212 8.05 QTL - Tassel branch number density (BN/L3)IBM umc1316
epf212 ra1-like gene epf212 8.05 QTL - Number of Kernels/Row (KN)IHO x B73 bmc1176
epf212 ra1-like gene epf212 8.05 QTL - Principal component 3 - tasselIBM p-ufg99F-232-D04
epf212 ra1-like gene epf212 8.05 QTL - Principal component 3 - tasselIBM p-umc1130
epf212 ra1-like gene epf212 8.05 QTL - Principal component 1 - tasselIBM p-umc1316
epf212 ra1-like gene epf212 8.05 QTL - Number of Kernels/Row (KN)IBM p-mmpP1H01
knox5 knotted related homeobox5 8.05 QTL - Principal component 3 - tasselIBM p-ufg99F-232-D04
knox5 knotted related homeobox5 8.05 QTL - Principal component 3 - tasselIBM p-umc1130
knox5 knotted related homeobox5 8.05 QTL - Principal component 1 - tasselIBM p-umc1316
knox5 knotted related homeobox5 8.05 QTL - Number of Kernels/Row (KN)IBM p-mmpP1H01
knox5 knotted related homeobox5 8.05 QTL - Tassel branch number density (BN/L3)IBM umc1316
knox5 knotted related homeobox5 8.05 QTL - Number of Kernels/Row (KN)IHO x B73 bmc1176
AF457118 lg4 liguleless4 8.05 QTL - Principal component 3 - tasselIBM p-ufg99F-232-D04
AF457118 lg4 liguleless4 8.05 QTL - Principal component 3 - tasselIBM p-umc1130
AF457118 lg4 liguleless4 8.05 QTL - Principal component 1 - tasselIBM p-umc1316
AF457118 lg4 liguleless4 8.05 QTL - Number of Kernels/Row (KN)IBM p-mmpP1H01
AF457118 lg4 liguleless4 8.05 QTL - Tassel branch number density (BN/L3)IBM umc1316
AF457118 lg4 liguleless4 8.05 QTL - Number of Kernels/Row (KN)IHO x B73 bmc1176
8.06 QTL - Principal component 3 - tasselIBM p-std606017H04
8.07 QTL - cob diameter36
8.07 QTL - Principal component 2 - tasselIBM AY110569_SNP
8.07 QTL - cob diameter31
8.08 QTL - Principal component 3 - tasselIBM p-umc1005
8.08 QTL - cob diameter21
8.08 QTL - Principal component 1 - tasselIBM p-umc1673
8.08 QTL - Principal component 2 - tasselIBM p-umc2357
8.09 QTL - Principal component 3 - tasselIBM p-Agrr21
baf1 barren stalk fastigiate1 9.00 QTL - Principal component 2 - tasselIBM p-umc1957
9.01 QTL - Principal component 3 - tasselIBM p-pC1L1
9.01 QTL - cob diameter4
9.01 QTL - Principal component 2 - tasselIBM p-umc1867
9.01 QTL - Principal component 2 - tasselIBM p-Bnlg1583
9.02 QTL - Tassel weight (TW)IHO x B73 phi017
9.02 QTL - Branch Zone length (L3)ILP x B73 umc1037
9.02/9.03 QTL - Principal component 1 - tasselIHO x B73 bnlg244-phi027
9.02 QTL - Principal component 3 - tasselIBM p-mmpP1E10
9.02 QTL - Principal component 1 - tasselIBM p-umc1636
9.02 QTL - Tassel weight (TW)IBM umc2336
9.02 QTL - Central spike spikelet density (CSD)IHO x B73 phi017
9.02 QTL - Branch Zone L/central spike L (L3/L2)ILP x B73 umc1037
9.02 QTL - Tassel branch angle (TBA)ILP x B73 umc1037
9.02 QTL - Principal component 3 - tasselIBM p-LIM286
9.02 QTL - Principal component 2 - tasselIBM p-mmpP1E10
9.02 QTL - Branch Zone length (L3)IBM umc1698
9.02 QTL - Total spikelets on central spike (TS)IHO x B73 phi017
9.02 QTL - Tassel branch angle (TBA)IHO x B73 bnlg244
9.02 QTL - Primary branch spikelet density (PSD)ILP x B73 umc1037
9.02/9.03 QTL - Primary branch spikelet density (PSD)IHO x B73 bnlg244
9.02 QTL - Principal component 3 - tasselIBM p-umc2336
9.02 QTL - BZ length/spike length (L3/L2)IBM umc1698
9.02 QTL - Principal component 3 - tasselIHO x B73 phi017-bnlg244
rgo1 reverse germ orientation 9.03 QTL - Principal component 1 - tasselIBM AY109816_IDP
rgo1 reverse germ orientation 9.03 QTL - Principal component 1 - tasselIBM p-umc1743
9.04 QTL - Principal component 1 - tasselIBM p-umc1107
fas1 fascicled ear1 9.05 QTL - Principal component 1 - tasselIBM p-umc1657
pinC CBSA021 pinformed-like gene - Pioneer 9.05 QTL - Principal component 1 - tasselIBM p-umc1657
Y0903 zmm8 Zea mays MADS8 9.06 QTL - Principal component 3 - tasselIBM p-ufg99F-232-G02
9.07 QTL - Principal component 3 - tasselIBM p-umc1137
10.01 QTL - Principal component 1 - tasselIBM p-php20075
10.01 QTL - Number of Kernel rows/cob (ROW)ILP x B73 p200075
10.01 QTL - Number of Kernel rows/cob (ROW)IBM p-php20075
10.02/10.04 QTL - Principal component 3 - tasselIHO x B73 phi059-phi084
cen2 CERAJ94 centroradialis gene - Pioneer 10.02 QTL - BZ length/spike length (L3/L2)IHO x B73 bmc1451
cen2 CERAJ94 centroradialis gene - Pioneer 10.02 QTL - Central spike length (L2)IHO x B73 bmc1451
cen2 CERAJ94 centroradialis gene - Pioneer 10.02 QTL - Central spike length (L2)IBM A1795367
cr4 crinkly4 10.02 QTL - Central spike length (L2)IBM A1795367
cr4 crinkly4 10.02 QTL - BZ length/spike length (L3/L2)IHO x B73 bmc1451
cr4 crinkly4 10.02 QTL - Central spike length (L2)IHO x B73 bmc1451
rel2 ramosa1 enhancer locus2 10.03 QTL - Principal component 3 - tasselILP x B73 u130-umc1962
BI478762 cen1A centroradialis-like gene McSteen 10.04 QTL - cob diameter22
BI478762 cen1A centroradialis-like gene McSteen 10.04 QTL - Principal component 3 - tasselIBM AY109698_IDP
epf517 ra1-like gene epf517 10.04 QTL - Principal component 3 - tasselIBM AY109698_IDP
epf517 ra1-like gene epf517 10.04 QTL - cob diameter22
tp2 teopod2 10.04 QTL - Principal component 3 - tasselIBM AY109698_IDP
tp2 teopod2 10.04 QTL - cob diameter22
10.05 QTL - Kernel number density (KD)IBM p-mmpP1G05
10.05 QTL - Kernel number density (KD)IHO x B73 umc1506
10.06 QTL - Principal component 1 - tasselIBM p-umc2122
10.06 QTL - Principal component 2 - tasselIBM p-Bnl17.02
10.06 QTL - Number of Kernel rows/cob (ROW)IHO x B73 umc1993
10.06 QTL - Number of Kernel rows/cob (ROW)IBM p-umc1993
10.07 QTL - Principal component 3 - tasselIBM p-umc2126
10.07 QTL - Principal component 3 - tasselIBM p-Bnl7.49
10.07 QTL - Principal component 3 - tasselIBM p-umc1176
10.07 QTL - Principal component 3 - tasselIBM p-Bnlg1450
10.07 QTL - Principal component 1 - tasselIBM p-Bnlg1450